If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ), 'gf_id' => 'HOM05D000779', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000779' ), 'data_identifier' => 'HOM05D000779', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000779', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '759', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p16590' => 'bna', 'A03p27950' => 'bna', 'A08p28190' => 'bna', 'A09p16330' => 'bna', 'A09p41270' => 'bna', 'Aa31LG2G60' => 'aar', 'Aa31LG4G10440' => 'aar', 'Aa31LG4G10450' => 'aar', 'Aa31LG7G7400' => 'aar', 'Aa31LG7G7410' => 'aar', 'Aa31sc59G10' => 'aar', 'Actinidia01506' => 'ach', 'Actinidia01680' => 'ach', 'Actinidia02336' => 'ach', 'Actinidia04735' => 'ach', 'Actinidia08147' => 'ach', 'Actinidia10240' => 'ach', 'Actinidia13491' => 'ach', 'Actinidia15069' => 'ach', 'Actinidia19281' => 'ach', 'Actinidia19332' => 'ach', 'Actinidia26883' => 'ach', 'Actinidia27796' => 'ach', 'Actinidia33080' => 'ach', 'Ah.02g130120' => 'amhyb', 'Ah.09g234520' => 'amhyb', 'Ah.11g039220' => 'amhyb', 'Ah.11g039240' => 'amhyb', 'AL1G37170' => 'aly', 'AL2G13540' => 'aly', 'AL2G29900' => 'aly', 'AL6G41780' => 'aly', 'Aqoxy1G02386' => 'aox', 'Aqoxy1G02951' => 'aox', 'Aqoxy1G03507' => 'aox', 'Aqoxy2G02762' => 'aox', 'Aqoxy3G02863' => 'aox', 'Aqoxy6G02971' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0VJ2KM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A8JEVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B0V7RI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6DE6U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EDBH1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EP4LC1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EUX0L6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F9ETHR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FN3HAQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FU8PR5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCQF9U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PY7HXB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U5Q1QL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V2YWYI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VD5ZG0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z81W9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZTJV1A' => 'arhy', 'AT1G23380' => 'ath', 'AT1G62360' => 'ath', 'AT1G70510' => 'ath', 'AT4G08150' => 'ath', 'ATR0087G010' => 'atr', 'ATR0629G005' => 'atr', 'ATR0796G220' => 'atr', 'ATR1152G076' => 'atr', 'Atru.chr10.2279' => 'acertr', 'Atru.chr11.2075' => 'acertr', 'Atru.chr13.899' => 'acertr', 'Atru.chr2.198' => 'acertr', 'Atru.chr6.3240' => 'acertr', 'Atru.chr9.2512' => 'acertr', 'AUR62005422' => 'cqu', 'AUR62012757' => 'cqu', 'AUR62014084' => 'cqu', 'AUR62021901' => 'cqu', 'AUR62034981' => 'cqu', 'AUR62034982' => 'cqu', 'AUR62039334' => 'cqu', 'AUR62039335' => 'cqu', 'BcaB01g02876' => 'bca', 'BcaB03g11937' => 'bca', 'BcaB05g24583' => 'bca', 'BcaB07g31318' => 'bca', 'BcaB07g31319' => 'bca', 'BcaB07g32333' => 'bca', 'BcaC01g04781' => 'bca', 'BcaC02g10476' => 'bca', 'BcaC03g15198' => 'bca', 'BcaC04g22393' => 'bca', 'BcaC05g26249' => 'bca', 'BcaC06g31896' => 'bca', 'BcaC07g39198' => 'bca', 'BolC2t08824H' => 'bol', 'BolC3t15694H' => 'bol', 'BolC5t30962H' => 'bol', 'BolC8t49827H' => 'bol', 'BolC9t54887H' => 'bol', 'BraA02t06715Z' => 'bra', 'BraA03t12008Z' => 'bra', 'BraA08t34750Z' => 'bra', 'BraA09t37271Z' => 'bra', 'BraA09t39621Z' => 'bra', 'C02p27790' => 'bna', 'C03p33750' => 'bna', 'C05p22630' => 'bna', 'C08p21880' => 'bna', 'C09p19820' => 'bna', 'CAN.G1014.46' => 'can', 'CAN.G1076.46' => 'can', 'CAN.G1076.7' => 'can', 'CAN.G1166.14' => 'can', 'CAN.G416.42' => 'can', 'CAN.G875.10' => 'can', 'CANSAT01G0279' => 'cansat', 'CANSAT25G3577' => 'cansat', 'CANSAT56G3935' => 'cansat', 'CANSAT64G1556' => 'cansat', 'CANSAT80G2355' => 'cansat', 'CARHR023820' => 'chi', 'CARHR049560' => 'chi', 'CARHR063720' => 'chi', 'CARHR259260' => 'chi', 'Carub.0001s2296' => 'cru', 'Carub.0002s0262' => 'cru', 'Carub.0002s1721' => 'cru', 'Carub.0006s2670' => 'cru', 'Ca_00692_v3' => 'car', 'Ca_04591_v3' => 'car', 'Ca_06106_v3' => 'car', 'Ca_10173_v3' => 'car', 'Ca_13197_v3' => 'car', 'Cc02_g35050' => 'ccan', 'Cc04_g12230' => 'ccan', 'Cc09_g01190' => 'ccan', 'Cc10_g07850' => 'ccan', 'Cc11_g15420' => 'ccan', 'Cc11_g15430' => 'ccan', 'CDE01G0469' => 'cde', 'CDE02G3223' => 'cde', 'CDE04G0701' => 'cde', 'CDE05G2442' => 'cde', 'CDE06G2668' => 'cde', 'CDE07G0209' => 'cde', 'CDE11G0101' => 'cde', 'Cfa000162' => 'cfa', 'Cfa006705' => 'cfa', 'Cfa009185' => 'cfa', 'Cfa017915' => 'cfa', 'Cfa019159' => 'cfa', 'Ciclev10001508m.g' => 'ccl', 'Ciclev10001779m.g' => 'ccl', 'Ciclev10015581m.g' => 'ccl', 'Ciclev10015818m.g' => 'ccl', 'Ciclev10022781m.g' => 'ccl', 'Ciclev10024581m.g' => 'ccl', 'Ciclev10033524m.g' => 'ccl', 'Ciclev10033752m.g' => 'ccl', 'CiPaw.03G156800' => 'cil', 'CiPaw.04G111400' => 'cil', 'CiPaw.05G187200' => 'cil', 'CiPaw.06G069700' => 'cil', 'CiPaw.07G029800' => 'cil', 'CiPaw.09G098000' => 'cil', 'CiPaw.10G074400' => 'cil', 'CiPaw.11G023900' => 'cil', 'CiPaw.15G043300' => 'cil', 'CiPaw.16G031100' => 'cil', 'ClCG01G021690' => 'cla', 'ClCG02G002200' => 'cla', 'ClCG02G014890' => 'cla', 'ClCG05G017660' => 'cla', 'ClCG05G025510' => 'cla', 'ClCG06G017080' => 'cla', 'ClCG08G016810' => 'cla', 'ClCG08G017820' => 'cla', 'ClCG08G017830' => 'cla', 'COL.COLO4_05551' => 'col', 'COL.COLO4_24223' => 'col', 'COL.COLO4_30088' => 'col', 'COL.COLO4_30089' => 'col', 'COL.COLO4_31831' => 'col', 'COL.COLO4_35372' => 'col', 'Cpa.g.sc152.56' => 'cpa', 'Cpa.g.sc152.57' => 'cpa', 'Cpa.g.sc160.20' => 'cpa', 'Cpa.g.sc254.5' => 'cpa', 'Cpa.g.sc254.6' => 'cpa', 'Cpa.g.sc48.162' => 'cpa', 'Cpa.g.sc69.80' => 'cpa', 'Cpa.g.sc69.81' => 'cpa', 'CsaV3_1G001430' => 'csa', 'CsaV3_2G007120' => 'csa', 'CsaV3_2G024800' => 'csa', 'CsaV3_2G025810' => 'csa', 'CsaV3_4G035390' => 'csa', 'CsaV3_5G031380' => 'csa', 'CsaV3_6G048730' => 'csa', 'CsaV3_7G003300' => 'csa', 'CSS0001653' => 'camsi', 'CSS0003866' => 'camsi', 'CSS0013716' => 'camsi', 'CSS0014431' => 'camsi', 'CSS0016559' => 'camsi', 'CSS0019602' => 'camsi', 'CSS0026319' => 'camsi', 'CSS0031183' => 'camsi', 'CSS0031661' => 'camsi', 'CSS0033696' => 'camsi', 'CSS0036489' => 'camsi', 'CSS0039163' => 'camsi', 'CSS0040787' => 'camsi', 'CSS0046164' => 'camsi', 'DCAR_000394' => 'dca', 'DCAR_002201' => 'dca', 'DCAR_012830' => 'dca', 'DCAR_019342' => 'dca', 'DCAR_026154' => 'dca', 'DCAR_026531' => 'dca', 'DCAR_030892' => 'dca', 'DCAR_031124' => 'dca', 'DCAR_031125' => 'dca', 'Dinv01227' => 'din', 'Dinv08733' => 'din', 'Dinv08734' => 'din', 'Dinv13938' => 'din', 'Dinv15261' => 'din', 'Dinv20105' => 'din', 'Dinv24446' => 'din', 'Dinv24818' => 'din', 'Dinv38566' => 'din', 'Dinv39740' => 'din', 'Dinv44917' => 'din', 'Duzib041G0151' => 'dzi', 'Duzib068G0623' => 'dzi', 'Duzib093G2177' => 'dzi', 'Duzib106G1268' => 'dzi', 'Duzib116G0024' => 'dzi', 'Duzib128G1946' => 'dzi', 'Duzib177G0823' => 'dzi', 'Duzib192G1076' => 'dzi', 'Duzib235G0652' => 'dzi', 'Duzib248G1681' => 'dzi', 'Duzib251G0684' => 'dzi', 'Duzib268G1392' => 'dzi', 'ECA233G2332' => 'eca', 'ECA234G0070' => 'eca', 'ECA236G0439' => 'eca', 'ECA246G2427' => 'eca', 'ECA246G3970' => 'eca', 'EL10Ac1g02334' => 'bvu', 'EL10Ac6g13714' => 'bvu', 'EL10Ac8g20128' => 'bvu', 'Eucgr.D01364' => 'egr', 'Eucgr.F00106' => 'egr', 'Eucgr.H02543' => 'egr', 'Eucgr.H02544' => 'egr', 'Eucgr.H03292' => 'egr', 'Eucgr.K02826' => 'egr', 'FAN02G0329' => 'fan', 'FAN02G4033' => 'fan', 'FAN04G3067' => 'fan', 'FAN05G1191' => 'fan', 'FAN05G3674' => 'fan', 'FAN07G1497' => 'fan', 'FAN08G1585' => 'fan', 'FAN09G1072' => 'fan', 'FAN09G3880' => 'fan', 'FAN09G4394' => 'fan', 'FAN12G3605' => 'fan', 'FAN12G3942' => 'fan', 'FAN13G1112' => 'fan', 'FAN14G2215' => 'fan', 'FAN14G3850' => 'fan', 'FAN14G4462' => 'fan', 'FAN15G2645' => 'fan', 'FAN17G1960' => 'fan', 'FAN18G3721' => 'fan', 'FAN18G4352' => 'fan', 'FAN20G2736' => 'fan', 'FAN21G0731' => 'fan', 'FAN22G2153' => 'fan', 'FAN24G2287' => 'fan', 'FAN25G0446' => 'fan', 'FAN25G3376' => 'fan', 'FAN27G2097' => 'fan', 'FvH4_2g32400' => 'fve', 'FvH4_3g01400' => 'fve', 'FvH4_3g04270' => 'fve', 'FvH4_4g26090' => 'fve', 'FvH4_5g05530' => 'fve', 'FvH4_6g07460' => 'fve', 'FvH4_6g42570' => 'fve', 'Glyma.01G028300' => 'gma', 'Glyma.02G036900' => 'gma', 'Glyma.02G269900' => 'gma', 'Glyma.03G231100' => 'gma', 'Glyma.04G049500' => 'gma', 'Glyma.04G185100' => 'gma', 'Glyma.07G263600' => 'gma', 'Glyma.08G284300' => 'gma', 'Glyma.09G007500' => 'gma', 'Glyma.10G147000' => 'gma', 'Glyma.14G047000' => 'gma', 'Glyma.14G091200' => 'gma', 'Glyma.15G111900' => 'gma', 'Glyma.15G257800' => 'gma', 'Glyma.17G010200' => 'gma', 'Glyma.17G232205' => 'gma', 'Glyma.18G141200' => 'gma', 'Glyma.19G228300' => 'gma', 'Glyma.20G097500' => 'gma', 'Gohir.A02G079600' => 'ghi', 'Gohir.A03G137400' => 'ghi', 'Gohir.A05G173100' => 'ghi', 'Gohir.A05G213100' => 'ghi', 'Gohir.A05G313500' => 'ghi', 'Gohir.A06G027200' => 'ghi', 'Gohir.A06G151100' => 'ghi', 'Gohir.A08G205600' => 'ghi', 'Gohir.A10G011000' => 'ghi', 'Gohir.A11G273500' => 'ghi', 'Gohir.A12G275600' => 'ghi', 'Gohir.A13G112100' => 'ghi', 'Gohir.D02G087500' => 'ghi', 'Gohir.D02G160400' => 'ghi', 'Gohir.D05G176100' => 'ghi', 'Gohir.D05G216500' => 'ghi', 'Gohir.D05G315000' => 'ghi', 'Gohir.D06G024500' => 'ghi', 'Gohir.D06G157300' => 'ghi', 'Gohir.D08G222600' => 'ghi', 'Gohir.D10G010600' => 'ghi', 'Gohir.D11G283600' => 'ghi', 'Gohir.D12G276300' => 'ghi', 'Gohir.D13G115100' => 'ghi', 'Gorai.004G236400' => 'gra', 'Gorai.005G098100' => 'gra', 'Gorai.005G180500' => 'gra', 'Gorai.007G306500' => 'gra', 'Gorai.008G296800' => 'gra', 'Gorai.009G181500' => 'gra', 'Gorai.009G223200' => 'gra', 'Gorai.009G336900' => 'gra', 'Gorai.010G029000' => 'gra', 'Gorai.010G183800' => 'gra', 'Gorai.011G011700' => 'gra', 'Gorai.013G129400' => 'gra', 'GSVIVG01004811001' => 'vvi', 'GSVIVG01007715001' => 'vvi', 'GSVIVG01009273001' => 'vvi', 'GSVIVG01013790001' => 'vvi', 'GSVIVG01018257001' => 'vvi', 'GSVIVG01030488001' => 'vvi', 'GSVIVG01031241001' => 'vvi', 'GSVIVG01038787001' => 'vvi', 'HanXRQChr05g0154621' => 'han', 'HanXRQChr05g0154641' => 'han', 'HanXRQChr05g0163601' => 'han', 'HanXRQChr08g0208581' => 'han', 'HanXRQChr08g0235001' => 'han', 'HanXRQChr12g0371661' => 'han', 'HanXRQChr12g0384321' => 'han', 'HanXRQChr15g0470571' => 'han', 'HanXRQChr16g0516911' => 'han', 'HanXRQChr17g0569921' => 'han', 'Haze_04060' => 'cav', 'Haze_07532' => 'cav', 'Haze_12781' => 'cav', 'Haze_18235' => 'cav', 'Haze_18237' => 'cav', 'Hma1.2p1_0008F-1.1_g005590' => 'hma', 'Hma1.2p1_0046F.1_g026670' => 'hma', 'Hma1.2p1_0052F.1_g030730' => 'hma', 'Hma1.2p1_0298F.1_g117470' => 'hma', 'Hma1.2p1_1068F.1_g253980' => 'hma', 'Hma1.2p1_1358F.1_g277970' => 'hma', 'HPP92_001240' => 'vpl', 'HPP92_011642' => 'vpl', 'HPP92_019517' => 'vpl', 'HPP92_019569' => 'vpl', 'Hund05256' => 'sun', 'Hund06011' => 'sun', 'Hund21436' => 'sun', 'Hund23432' => 'sun', 'Hund25375' => 'sun', 'Lalb_Chr04g0249941' => 'lal', 'Lalb_Chr05g0216661' => 'lal', 'Lalb_Chr11g0070471' => 'lal', 'Lalb_Chr14g0367951' => 'lal', 'Lalb_Chr15g0087751' => 'lal', 'Lalb_Chr16g0382101' => 'lal', 'Lalb_Chr20g0118951' => 'lal', 'Lalb_Chr21g0310291' => 'lal', 'Lalb_Chr22g0355891' => 'lal', 'Lalb_Chr23g0267711' => 'lal', 'Lj2A264G31' => 'lonja', 'Lj2g0005522' => 'lja', 'Lj3A1055T47' => 'lonja', 'Lj4C78G5' => 'lonja', 'Lj4g0001811' => 'lja', 'Lj5A126T78' => 'lonja', 'Lj5A333G13' => 'lonja', 'Lj5C126T8' => 'lonja', 'Lj5g0001279' => 'lja', 'Lj5g0012934' => 'lja', 'Lj6g0027145' => 'lja', 'LjContig00564g0013607' => 'lja', 'Lsat_1_v5_gn_4_4840' => 'lsa', 'Lsat_1_v5_gn_4_61641' => 'lsa', 'Lsat_1_v5_gn_5_15140' => 'lsa', 'Lsat_1_v5_gn_6_108340' => 'lsa', 'Lsat_1_v5_gn_7_15020' => 'lsa', 'Lsat_1_v5_gn_8_154561' => 'lsa', 'Manes.05G184900' => 'mes', 'Manes.06G106700' => 'mes', 'Manes.08G111000' => 'mes', 'Manes.09G176900' => 'mes', 'Manes.12G025600' => 'mes', 'Manes.13G027401' => 'mes', 'Manes.16G003000' => 'mes', 'Manes.17G027300' => 'mes', 'Manes.18G052901' => 'mes', 'Mapoly0023s0081' => 'mpo', 'Mapoly0174s0007' => 'mpo', 'Mapoly0175s0020' => 'mpo', 'MBI16_g05023_MAGBIO' => 'mbi', 'MBI16_g05473_MAGBIO' => 'mbi', 'MBI16_g08499_MAGBIO' => 'mbi', 'MBI16_g46692_MAGBIO' => 'mbi', 'MBI18_g17314_MAGBIO' => 'mbi', 'MCO03G338' => 'mco', 'MD04G1215500' => 'mdo', 'MD05G1352500' => 'mdo', 'MD06G1171700' => 'mdo', 'MD08G1075200' => 'mdo', 'MD09G1112500' => 'mdo', 'MD10G1276200' => 'mdo', 'MD10G1326500' => 'mdo', 'MD12G1205700' => 'mdo', 'MD13G1095800' => 'mdo', 'MD14G1177200' => 'mdo', 'MD15G1062700' => 'mdo', 'MD16G1097200' => 'mdo', 'MD17G1102600' => 'mdo', 'Medtr1g017080' => 'mtr', 'Medtr1g084060' => 'mtr', 'Medtr2g024390' => 'mtr', 'Medtr5g033720' => 'mtr', 'Medtr5g085860' => 'mtr', 'MELO3C000527.2' => 'cme', 'MELO3C004181.2' => 'cme', 'MELO3C007417.2' => 'cme', 'MELO3C010678.2' => 'cme', 'MELO3C010775.2' => 'cme', 'MELO3C011979.2' => 'cme', 'MELO3C016850.2' => 'cme', 'MELO3C018844.2' => 'cme', 'MELO3C026289.2' => 'cme', 'Migut.B00961' => 'egut', 'Migut.E00181' => 'egut', 'Migut.H01590' => 'egut', 'Migut.L01469' => 'egut', 'Migut.L01470' => 'egut', 'Migut.N02807' => 'egut', 'Migut.N02808' => 'egut', 'MSTRG.13129' => 'ama', 'MSTRG.13356' => 'ama', 'MSTRG.14625' => 'ama', 'MSTRG.16008' => 'ama', 'MSTRG.16410' => 'ama', 'MSTRG.20377' => 'ama', 'MSTRG.22199' => 'ama', 'MSTRG.22200' => 'ama', 'MSTRG.2406' => 'ama', 'MSTRG.24397' => 'ama', 'MSTRG.580' => 'ama', 'MSTRG.7913' => 'ama', 'Nitab4.5_0000155g0100' => 'nta', 'Nitab4.5_0000338g0120' => 'nta', 'Nitab4.5_0000338g0130' => 'nta', 'Nitab4.5_0000368g0070' => 'nta', 'Nitab4.5_0001207g0120' => 'nta', 'Nitab4.5_0001207g0130' => 'nta', 'Nitab4.5_0001207g0140' => 'nta', 'Nitab4.5_0001409g0250' => 'nta', 'Nitab4.5_0001614g0180' => 'nta', 'Nitab4.5_0003229g0130' => 'nta', 'Nitab4.5_0004951g0010' => 'nta', 'Nitab4.5_0004951g0020' => 'nta', 'Nitab4.5_0005726g0010' => 'nta', 'Nitab4.5_0005883g0010' => 'nta', 'Nitab4.5_0006891g0030' => 'nta', 'Nitab4.5_0013070g0020' => 'nta', 'Nn1g03393' => 'nnu', 'Nn1g07273' => 'nnu', 'Nn2g11342' => 'nnu', 'Nn3g16803' => 'nnu', 'Nn3g21697' => 'nnu', 'Nn4g22704' => 'nnu', 'Nn4g25593' => 'nnu', 'Nn5g30694' => 'nnu', 'Nn6g34558' => 'nnu', 'Oeu000009.1' => 'oeu', 'Oeu000011.1' => 'oeu', 'Oeu001722.1' => 'oeu', 'Oeu003151.1' => 'oeu', 'Oeu007153.1' => 'oeu', 'Oeu016566.1' => 'oeu', 'Oeu018084.1' => 'oeu', 'Oeu022156.1' => 'oeu', 'Oeu031761.1' => 'oeu', 'Oeu038601.1' => 'oeu', 'Oeu038606.1' => 'oeu', 'Oeu038607.1' => 'oeu', 'Oeu049696.2' => 'oeu', 'Oeu051884.1' => 'oeu', 'Oeu053667.3' => 'oeu', 'Os01g0302500' => 'osa', 'Os03g0673000' => 'osa', 'Os03g0673500' => 'osa', 'Os03g0727000' => 'osa', 'Os03g0727200' => 'osa', 'Os03g0771500' => 'osa', 'Os03g0772100' => 'osa', 'Os05g0129700' => 'osa', 'Os07g0129700' => 'osa', 'Peaxi162Scf00089g01735' => 'pax', 'Peaxi162Scf00628g00311' => 'pax', 'Peaxi162Scf00673g00046' => 'pax', 'Peaxi162Scf00708g00039' => 'pax', 'Peaxi162Scf01147g00014' => 'pax', 'PGR004G1732' => 'pgr', 'PGR031G0683' => 'pgr', 'PGR044G2671' => 'pgr', 'PGR083G0232' => 'pgr', 'PGR119G0092' => 'pgr', 'PGSC0003DMG400002769' => 'stu', 'PGSC0003DMG400004953' => 'stu', 'PGSC0003DMG400013493' => 'stu', 'PGSC0003DMG400016711' => 'stu', 'PGSC0003DMG400018100' => 'stu', 'PGSC0003DMG400037011' => 'stu', 'Phvul.001G032200' => 'pvu', 'Phvul.001G224900' => 'pvu', 'Phvul.002G064100' => 'pvu', 'Phvul.003G062500' => 'pvu', 'Phvul.003G081800' => 'pvu', 'Phvul.006G145800' => 'pvu', 'Phvul.007G201400' => 'pvu', 'Phvul.008G212100' => 'pvu', 'Phvul.009G176750' => 'pvu', 'Potri.002G113300' => 'ptr', 'Potri.004G004700' => 'ptr', 'Potri.005G014200' => 'ptr', 'Potri.006G270401' => 'ptr', 'Potri.008G188700' => 'ptr', 'Potri.010G043500' => 'ptr', 'Potri.011G011101' => 'ptr', 'Potri.012G087100' => 'ptr', 'Potri.013G008600' => 'ptr', 'Potri.015G079100' => 'ptr', 'Pp3c18_18720' => 'ppa', 'Pp3c18_18750' => 'ppa', 'Pp3c19_5610' => 'ppa', 'Pp3c19_5620' => 'ppa', 'Pp3c21_10320' => 'ppa', 'Prupe.1G249600' => 'ppe', 'Prupe.1G416700' => 'ppe', 'Prupe.3G212100' => 'ppe', 'Prupe.4G015200' => 'ppe', 'Prupe.5G171100' => 'ppe', 'Prupe.6G312900' => 'ppe', 'Psat0s1183g0080' => 'psa', 'Psat0s1648g0080' => 'psa', 'Psat0s4433g0040' => 'psa', 'Psat2g025800' => 'psa', 'Psat2g105840' => 'psa', 'PSO063G5996' => 'pso', 'PSO170G4169' => 'pso', 'PSO210G7828' => 'pso', 'PSO357G0678' => 'pso', 'PSO541G1820' => 'pso', 'PSO541G5984' => 'pso', 'PSO675G1677' => 'pso', 'PSO675G3958' => 'pso', 'PSO761G0318' => 'pso', 'PSO832G3718' => 'pso', 'QL02p001931' => 'qlo', 'QL03p008675' => 'qlo', 'QL03p013737' => 'qlo', 'QL03p059023' => 'qlo', 'QL03p059030' => 'qlo', 'QL05p071925' => 'qlo', 'QL05p071945' => 'qlo', 'QL08p031058' => 'qlo', 'QL10p009568' => 'qlo', 'RcHm_v2.0_Chr2g0158421' => 'rch', 'RcHm_v2.0_Chr3g0457121' => 'rch', 'RcHm_v2.0_Chr4g0433571' => 'rch', 'RcHm_v2.0_Chr5g0002121' => 'rch', 'RcHm_v2.0_Chr6g0310301' => 'rch', 'RcHm_v2.0_Chr7g0193251' => 'rch', 'Rhsim05G0126900' => 'rsi', 'Rhsim08G0174100' => 'rsi', 'Rhsim12G0113400' => 'rsi', 'Rhsim12G0113500' => 'rsi', 'Rhsim13G0150200' => 'rsi', 'Sabra02G0089800' => 'sbr', 'Sabra04G0002400' => 'sbr', 'Sabra05G0009900' => 'sbr', 'Sabra05G0010400' => 'sbr', 'Sabra05G0011200' => 'sbr', 'Sabra05G0022900' => 'sbr', 'Sabra08G0142900' => 'sbr', 'Sabra08G0143000' => 'sbr', 'Sabra10G0024200' => 'sbr', 'Sabra10G0024300' => 'sbr', 'Sabra11G0008300' => 'sbr', 'Sabra12G0062400' => 'sbr', 'Sabra13G0007200' => 'sbr', 'SalBow1G0106' => 'sbo', 'SalBow2G1053' => 'sbo', 'SalBow7G4052' => 'sbo', 'SalBow7G4076' => 'sbo', 'SalBow8G0479' => 'sbo', 'SalBow8G2959' => 'sbo', 'Sc02g0008280' => 'sci', 'Sc11g0001050' => 'sci', 'Sc12g0002150' => 'sci', 'Sc17g0007580' => 'sci', 'Sc26g0004260' => 'sci', 'Sed0005255' => 'sed', 'Sed0005309' => 'sed', 'Sed0006486' => 'sed', 'Sed0008933' => 'sed', 'Sed0010436' => 'sed', 'Sed0016871' => 'sed', 'Sed0017114' => 'sed', 'Sed0018081' => 'sed', 'Sed0018694' => 'sed', 'Sed0020752' => 'sed', 'Sed0023815' => 'sed', 'SEGI_00082' => 'sgi', 'SEGI_06213' => 'sgi', 'SEGI_07794' => 'sgi', 'SEGI_10526' => 'sgi', 'SEGI_29385' => 'sgi', 'SEGI_36691' => 'sgi', 'SEGI_39888' => 'sgi', 'SEGI_39954' => 'sgi', 'SGA_v2.0_scaffold28G11847' => 'sas', 'SGA_v2.0_scaffold53G19283' => 'sas', 'SGA_v2.0_scaffold87G27098' => 'sas', 'SGA_v2.0_scaffold89G27485' => 'sas', 'SHI02231' => 'shi', 'SHI22935' => 'shi', 'SMO141G0051' => 'smo', 'SMO141G0081' => 'smo', 'SMO170G0030' => 'smo', 'SMO329G0050' => 'smo', 'Solyc01g100510.4' => 'sly', 'Solyc02g081120.4' => 'sly', 'Solyc03g112735.1' => 'sly', 'Solyc03g112740.2' => 'sly', 'Solyc04g077210.3' => 'sly', 'Solyc05g005090.4' => 'sly', 'Sopen00g009170' => 'spe', 'Sopen01g044020' => 'spe', 'Sopen02g025760' => 'spe', 'Sopen03g031820' => 'spe', 'Sopen05g001110' => 'spe', 'Sp1g20820' => 'spa', 'Sp2g02240' => 'spa', 'Sp5g25630' => 'spa', 'Sp6g10130' => 'spa', 'TAR362G0303' => 'tar', 'TAR374G1201' => 'tar', 'TAR376G0473' => 'tar', 'TAR381G1392' => 'tar', 'TAR622G0241' => 'tar', 'TAR622G0700' => 'tar', 'TAR624G0956' => 'tar', 'TAR626G0836' => 'tar', 'TAR628G1242' => 'tar', 'TAR633G0095' => 'tar', 'TAR633G0726' => 'tar', 'THA.LOC104806966' => 'tha', 'THA.LOC104809671' => 'tha', 'THA.LOC104822155' => 'tha', 'THA.LOC104822977' => 'tha', 'THA.LOC104825275' => 'tha', 'THA.LOC104825802' => 'tha', 'Thecc.02G255200' => 'tca', 'Thecc.03G015400' => 'tca', 'Thecc.05G323200' => 'tca', 'Thecc.06G228000' => 'tca', 'Thecc.08G081900' => 'tca', 'Thhalv10008711m.g' => 'esa', 'Thhalv10009009m.g' => 'esa', 'Thhalv10019184m.g' => 'esa', 'Thhalv10019501m.g' => 'esa', 'Thhalv10023520m.g' => 'esa', 'Thhalv10028724m.g' => 'esa', 'TPR.G13053' => 'tpr', 'TPR.G14450' => 'tpr', 'TPR.G22381' => 'tpr', 'TPR.G2622' => 'tpr', 'TPR.G39859' => 'tpr', 'TPR.G7352' => 'tpr', 'TWI12G0165' => 'twi', 'TWI18G0621' => 'twi', 'TWI36G1532' => 'twi', 'TWI38G0262' => 'twi', 'TWI38G1657' => 'twi', 'TWI56G0557' => 'twi', 'TWI56G1098' => 'twi', 'TWI75G0738' => 'twi', 'unitig_21.g20621' => 'ugi', 'unitig_32.g11044' => 'ugi', 'unitig_37.g12618' => 'ugi', 'unitig_62.g23511' => 'ugi', 'unitig_748.g7932' => 'ugi', 'unitig_8.g3938' => 'ugi', 'unitig_8.g4861' => 'ugi', 'unitig_8.g4862' => 'ugi', 'vmacro03665' => 'vma', 'vmacro16218' => 'vma', 'vmacro16219' => 'vma', 'vmacro19404' => 'vma', 'vmacro19757' => 'vma', 'vmacro21400' => 'vma', 'VMungo0251G0415' => 'vmu', 'VMungo0251G3462' => 'vmu', 'VMungo0540G1546' => 'vmu', 'VMungo0603G0001' => 'vmu', 'VMungo0647G0755' => 'vmu', 'VMungo0647G0834' => 'vmu', 'VMungo0720G2194' => 'vmu', 'VMungo1215G1263' => 'vmu', 'VMungo1215G2426' => 'vmu', 'VMungo1215G2814' => 'vmu', 'VMungo1215G3457' => 'vmu', 'VMungo1309G1977' => 'vmu', 'VMungo1383G0325' => 'vmu', 'Zm00001eb031950' => 'zma', 'Zm00001eb052120' => 'zma', 'Zm00001eb055920' => 'zma', 'Zm00001eb055940' => 'zma', 'Zm00001eb058930' => 'zma', 'Zm00001eb108700' => 'zma', 'Zm00001eb117820' => 'zma', 'Zm00001eb130180' => 'zma', 'Zm00001eb181490' => 'zma', 'Zm00001eb217470' => 'zma', 'Zm00001eb217480' => 'zma', 'Zm00001eb264910' => 'zma', 'Zm00001eb299420' => 'zma', 'Zm00001eb354670' => 'zma', 'Zm00001eb354880' => 'zma', 'Zm00001eb437470' => 'zma', 'Zm00001eb438600' => 'zma' ) $gf_id = 'HOM05D000779' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000779' ) $data_identifier = 'HOM05D000779' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 6, 'ach' => (int) 13, 'amhyb' => (int) 4, 'aly' => (int) 4, 'aox' => (int) 6, 'arhy' => (int) 17, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 8, 'bca' => (int) 13, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 5, 'ccan' => (int) 6, 'cde' => (int) 7, 'cfa' => (int) 5, 'ccl' => (int) 8, 'cil' => (int) 10, 'cla' => (int) 9, 'col' => (int) 6, 'cpa' => (int) 8, 'csa' => (int) 8, 'camsi' => (int) 14, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 6, 'fan' => (int) 27, 'fve' => (int) 7, 'gma' => (int) 19, 'ghi' => (int) 24, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 10, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 4, 'sun' => (int) 5, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 9, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 5, 'cme' => (int) 9, 'egut' => (int) 7, 'ama' => (int) 12, 'nta' => (int) 16, 'nnu' => (int) 9, 'oeu' => (int) 15, 'osa' => (int) 9, 'pax' => (int) 5, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 9, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 13, 'sbo' => (int) 6, 'sci' => (int) 5, 'sed' => (int) 11, 'sgi' => (int) 8, 'sas' => (int) 4, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 4, 'tar' => (int) 11, 'tha' => (int) 6, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 8, 'vma' => (int) 6, 'vmu' => (int) 13, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb438600' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1